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Dr. Arlin Stoltzfus Print Print   Email Email  

Positions:

Research Biologist, NIST

Adjunct Associate Professor, UMBI

Education:

Ph.D., Biology, University of Iowa, 1991

B.A., English, Grinnell College, 1985

Email: stoltzfu@umbi.umd.edu

Homepage:Stoltzfus Lab

Voice: (240) 314-6208

FAX: (240) 314-6255

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Research Overview

DNA, Mutations and Evolution

Genetic information is contained in DNA sequences, which contain sequences that specify the amino acid sequences of proteins, and which also contain sequences that regulate the expression of that information within living cells. All of this information is represented by the sequence of four types of subunits found in all DNA sequence: it is the sequence of these four subunits (adenosine, cytosine, guanosine and thymine) abbreviated A, C, G, and T, that represents all forms of genetic information contained in DNA.

 

When these subunits change (for example, an A changes to a C or a T), this is referred to as...

 

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Research Description

Research Area: Computational Biology

Research Specialties: Bioinformatics, Evolution

 

The Stoltzfus group uses computer simulations and statistical data analysis to explore models and to test hypotheses about the evolution of genes, proteins, and genomes.

 

The evolution of introns is a long-standing interest. The diversity of intron sites observed in a eukaryotic gene family is due primarily, not to inheritance of primordial introns, nor to "intron sliding", but to the gain of introns (Stoltzfus, et al., 1997). Therefore our research focuses on models of intron gain (e.g., Qiu, et al., 2004). Recent work includes a model of intron gain that accounts largely for non-uniformity in the positions of introns relative to protein structure (De Kee, et al, accepted).

 

A second major topic is understanding the role of mutation in evolution. Contrary to conventional wisdom, mutation is non-uniform, and its non-uniformities impose non-uniformities on evolution, even adaptive evolution. This influence raises many questions...

 

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Additional Info

National Institute of Standards and Technology (NIST)

 

Chemical Science and Technology Laboratory

Biotechnology Division

Representative Publications

Stoltzfus, A. 2006. Mutation-Biased Adaptation in a Protein NK Model. Molecular Biology and Evolution 23:1852-1862.

 

Stoltzfus, A. 2006. Mutationism and the Dual Causation of Evolutionary Change. Evolution and Development 8: 304-317.

 

Gopalan V, Qiu WG, Chen MZ, Stoltzfus A. Nexplorer: phylogeny-based exploration of sequence family data. Bioinformatics. 2005 Nov 2.

 

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